PyPanda: a Python package for gene regulatory network reconstruction
نویسندگان
چکیده
PANDA (Passing Attributes between Networks for Data Assimilation) is a gene regulatory network inference method that uses message-passing to integrate multiple sources of 'omics data. PANDA was originally coded in C ++. In this application note we describe PyPanda, the Python version of PANDA. PyPanda runs considerably faster than the C ++ version and includes additional features for network analysis. AVAILABILITY AND IMPLEMENTATION The open source PyPanda Python package is freely available at http://github.com/davidvi/pypanda CONTACT: [email protected] or [email protected].
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